0628 D3Similarity

ligprep 的结果也出来了,可以试试
D3Similarity预测
  • 85.12 /home/zjxu/zzy/hsbd/similarity/1
  • (rdkit) [zjxu@R820 1]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 1 &
  • [1] 50872

  • 85.12 /home/zjxu/zzy/hsbd/similarity/2
  • (rdkit) [zjxu@R820 2]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 2 &
  • [2] 51803

  • 85.12 /home/zjxu/zzy/hsbd/similarity/3
  • (rdkit) [zjxu@R820 3]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 3 &
  • [3] 52044

  • 85.12 /home/zjxu/zzy/hsbd/similarity/4
  • (rdkit) [zjxu@R820 4]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 4 &
  • [4] 52229

  • (rdkit) [zjxu@R820 similarity]$ jobs
  • [1]   Running                 nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 1 &  (wd: ~/zzy/hsbd/similarity/1)
  • [2]   Running                 nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 2 &  (wd: ~/zzy/hsbd/similarity/2)
  • [3]-  Running                 nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 3 &  (wd: ~/zzy/hsbd/similarity/3)
  • [4]+  Running                 nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 4 &  (wd: ~/zzy/hsbd/similarity/4)
  • # D3Similarity 会把分子重新命名,把名字重新fit回去
  • for a in `cat index`;do c=`grep TCMID ../../../5/${a}.mol2`;sed -i "s/\b$a\b/$c/g" hsbd-1894mol-2d_results-sorted2dx3d_tgt7.txt;done