0628 D3Similarity
ligprep 的结果也出来了,可以试试
D3Similarity预测
- 85.12 /home/zjxu/zzy/hsbd/similarity/1
- (rdkit) [zjxu@R820 1]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 1 &
- [1] 50872
- 85.12 /home/zjxu/zzy/hsbd/similarity/2
- (rdkit) [zjxu@R820 2]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 2 &
- [2] 51803
- 85.12 /home/zjxu/zzy/hsbd/similarity/3
- (rdkit) [zjxu@R820 3]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 3 &
- [3] 52044
- 85.12 /home/zjxu/zzy/hsbd/similarity/4
- (rdkit) [zjxu@R820 4]$ nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 4 &
- [4] 52229
- (rdkit) [zjxu@R820 similarity]$ jobs
- [1] Running nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 1 & (wd: ~/zzy/hsbd/similarity/1)
- [2] Running nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 2 & (wd: ~/zzy/hsbd/similarity/2)
- [3]- Running nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 3 & (wd: ~/zzy/hsbd/similarity/3)
- [4]+ Running nohup python D3Similarity-VS_Linux_201102.py ../data/hsbd-1894mol-2d.mol2 4 & (wd: ~/zzy/hsbd/similarity/4)
- # D3Similarity 会把分子重新命名,把名字重新fit回去
- for a in
`cat index`
;do c=`grep TCMID ../../../5/${a}.mol2`
;sed -i "s/\b$a\b/$c/g" hsbd-1894mol-2d_results-sorted2dx3d_tgt7.txt;done