12.17 d3targets-results
完成了16个预计购买化合物的文献调研
补充D3Docking,D3Similarity 结果
- 85.23 /home/databank_70t/zzy/project/hsbd/D3Targets-dock/workdir/3cl-pl-real-allconf-best-pkt/analysis/druglikeness/1217-ref
- D3DOCKING
- 85.23 /home/databank_70t/zzy/project/hsbd/D3Targets-dock/workdir/3cl-pl-real-allconf-best-pkt/analysis/
- # 对于有打分top的,直接统计(result-analysis.sh 自动输出的)
- # 16mol-purchase 是16个excel里调研的化合物
- for i in
`cat 16mol-purchase`
;do echo "####### $i ########";grep -w $i rank1-dock-result.txt|sort -k5,5n|awk '{printf "%s %.2f %.2f\n", $2, $5, $7}';done - # serach 是找不到 D3Dock Top结果的4个化合物,再把rank前3的拿过来
- for i in
`cat serach`
;do echo "####### $i ########";grep -w $i ../../data/*|sort -k5,5n|head -n3|awk '{printf "%s %.2f %.2f\n", $2, $5, $7}';done
- D3Similarity
- # 原位置
- 85.12 /home/zjxu/zzy/hsbd/similarity/analysis/36mol/result.txt
- # 转移后位置
- 85.23 /home/databank_70t/zzy/project/hsbd/D3Targets-dock/workdir/3cl-pl-real-allconf-best-pkt/analysis/druglikeness/1217-ref/d3sim-result.txt
- for i in
`cat 16mol-purchase`
;do echo "##### $i #####";grep -w $i d3sim-result.txt;done
- # 85.23 /home/databank_70t/zzy/project/hsbd/D3Targets-dock/workdir/3cl-pl-real-allconf-best-pkt/analysis/druglikeness/1217-ref
- for i in
`cat 16mol-purchase`
;do echo "####### $i ########">>111;grep -w $i ../../data/*|sort -k5,5n|awk '{printf "%s %.2f %.2f\n", $2, $5, $7}' >>111;done - # 统计每个靶点在16个化合物上的打分平均值
- for i in
`grep -v "#" 111 |awk '{print $1}'|sort|uniq`
;do echo "############ $i ###############";grep -w $i 111|awk '{sum += $2; count++} END {if (count > 0) print sum / count}';done - # 挑选MD受体
- for i in
`cat 13mol-cmd`
;do echo "####### $i ########">>111;grep -w $i ../../data/*|sort -k5,5n|awk '{printf "%s %.2f %.2f\n", $2, $5, $7}' >>111;done - # 统计每个靶点在16个化合物上的打分平均值
- for i in
`grep -v "#" 111 |awk '{print $1}'|sort|uniq`
;do echo "############ $i ###############";grep -w $i 111|awk '{sum += $2; count++} END {if (count > 0) print sum / count}';done