pymol
generate dimer from a monomer
- fetch 4ryl
- symexp 4ryl, 4ryl, 4ryl, 3
references and materials:
- protein structure - Generate full dimer from monomer with C2 symmetry? - Biology Stack Exchange
- How can I generate a dimer from a given conformation of a monomer, without any information from a crystal structure? | Schrödinger (schrodinger.com)
select
- select resn ARG and name NH1 or name NH2
- select resn GLU and name OE1 or name OE2
- dist 1, ARG_N, GLU_O, 5, mode=2
references and materials:
for-loop
- PyMOL>for i in [1,2,3]: cmd.group("%s-com"%(i), "%s*"%(i))